Carrot Cake Muffins with a Creamy Cheesecake Filling

introduction

I had one of those evenings where homework, a soccer bag, and a phone call all showed up at once — and the kids wanted a treat. I wanted something simple, handheld, and a little fancy so everyone would feel special. I grabbed carrots from the fridge, a block of cream cheese, and a muffin tin and turned a busy night into a small kitchen celebration. These Carrot Cake Muffins with Cheesecake Filling came out moist, lightly spiced, and filled with a tangy surprise that made the kids’ eyes light up. If you like easy desserts that look homemade but taste bakery-fresh, this is a winner. For other quick family-approved cheesecake ideas, try this Biscoff cheesecake for a different crowd-pleasing twist.

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why make this recipe

Make this recipe because it gives you the best of both worlds: a tender carrot cake base and a creamy cheesecake center. Muffins are quick to portion and easy to pack for school lunches or weekend brunch. The recipe uses pantry staples and a small block of cream cheese for a filling that feels indulgent without extra work. It’s also a smart choice for running a blog or Pinterest page — these look great in photos and perform well with keywords like carrot cake, cheesecake filling, and easy muffin recipe. If you need a fall-friendly or apple-themed bake to pair with these for a recipe roundup, consider baking some caramel apple cheesecake bars alongside.

how to make Carrot Cake Muffins with Cheesecake Filling: Irresistibly Delicious!

Start by mixing dry spices and leaveners so they distribute evenly. Whisk wet ingredients in another bowl until smooth, then fold the dry mix into the wet mixture only until combined to keep the muffins tender. Stir in grated carrots and gently fold in the drained crushed pineapple for extra moisture and subtle sweetness. The cheesecake filling comes together in one bowl — just beat cream cheese with powdered sugar and vanilla until silky. Spoon some batter into the muffin cup, add a dollop of filling, then top with more batter. Bake until a toothpick comes out clean from the cake portion, and cool on a rack so the filling firms slightly. This method keeps the steps clear and the texture balanced without repeating every single direction.

Ingredients :

1 1/2 cups all-purpose flour, 1 tsp baking powder, 1/2 tsp baking soda, 1/2 tsp salt, 1 tsp ground cinnamon, 1/2 tsp ground nutmeg, 1/2 cup granulated sugar, 1/2 cup brown sugar, 1/2 cup vegetable oil, 2 large eggs, 1 tsp vanilla extract, 1 1/2 cups grated carrots, 1/2 cup crushed pineapple, drained, 8 oz cream cheese, softened, 1/4 cup powdered sugar, 1 tsp vanilla extract (for filling)

Directions :

Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners., In a large bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg., In another bowl, mix the granulated sugar, brown sugar, vegetable oil, eggs, and vanilla extract until well combined., Gradually add the dry ingredients to the wet ingredients, mixing until just combined., Fold in the grated carrots and crushed pineapple., In a separate bowl, beat the cream cheese, powdered sugar, and vanilla extract until smooth to make the cheesecake filling., Fill each muffin cup halfway with the carrot cake batter, add a spoonful of cheesecake filling, then top with more carrot cake batter until the cups are about 3/4 full., Bake for 20-25 minutes or until a toothpick inserted into the center comes out clean., Allow to cool in the pan for 5 minutes before transferring to a wire rack to cool completely.

how to serve Carrot Cake Muffins with Cheesecake Filling: Irresistibly Delicious!

Serve these warm or at room temperature. A light dusting of powdered sugar or a thin drizzle of cream cheese glaze makes them photo-ready for a Pinterest pin. They work well for breakfast with coffee, as an after-school snack, or at a brunch table next to fruit and yogurt. Plate a few on a simple white dish to show off the cheesecake center when you cut one in half. For a dessert spread, add a token of contrast like plain Greek yogurt or a tart fruit compote to balance the sweetness.

how to store Carrot Cake Muffins with Cheesecake Filling: Irresistibly Delicious!

Store cooled muffins in an airtight container in the fridge for up to 4 days because of the cheesecake filling. If you need to keep them longer, freeze individually wrapped muffins for up to 2 months; thaw overnight in the fridge and bring to room temperature before serving. To keep moisture right, place a paper towel under the lid to absorb any excess condensation when refrigerating. Reheat gently in a low oven (300°F) for 5–8 minutes, or microwave for 15–20 seconds if you want them warm.

tips to make Carrot Cake Muffins with Cheesecake Filling: Irresistibly Delicious!

  • Use freshly grated carrots for the best texture; pre-shredded carrots can be drier.
  • Drain the crushed pineapple well in a sieve and press with a spoon so it doesn’t add too much liquid to the batter.
  • Bring the cream cheese to room temperature before beating; it makes a smoother filling. You can speed this up by cutting it into cubes 20–30 minutes before.
  • Don’t overmix the batter once you add the flour — stop when streaks disappear to avoid dense muffins.
  • Scoop batter with a small ice cream scoop for even muffin sizes and neat cheesecake centers.
  • For related creamy dessert ideas that travel well to potlucks, try this caramel apple cheesecake dip for a shareable option.

variation (if any)

  • Add chopped walnuts or pecans to the batter for crunch.
  • Fold in 1/2 cup of raisins or chopped dried pineapple instead of crushed pineapple for a different chew.
  • Swap 1/4 cup of oil for Greek yogurt to lighten the fat while keeping moisture.
  • Make mini muffins: bake 10–12 minutes and watch closely so the cheesecake filling sets without leaking.
  • For a creamier top, pipe a little whipped cream cheese frosting after cooling and chill before serving.

FAQs (minimum three FAQ)

Q: Can I make these dairy-free?
A: You can use dairy-free cream cheese and a plant-based oil. Texture may vary slightly, but the muffins will still be tasty. Choose a stable dairy-free cream cheese for the filling.

Q: How can I tell when the cheesecake filling is done?
A: The cheesecake center should be set but slightly soft. A toothpick from the cake part should come out mostly clean; a little cream near the filling is okay because the center is softer by design.

Q: Can I prepare these ahead for a party?
A: Yes. Bake and cool completely, refrigerate in a single layer for up to 4 days, then bring to room temperature before serving. For longer prep, freeze and thaw the night before the event.

Q: Will the cheesecake filling sink or leak out?
A: If you fill the muffin cups about halfway, add the filling, then top with batter to 3/4 full (as the directions state), you should avoid leakage. Overfilling or using too much filling can cause leaks.

Q: Can I use paper liners or should I grease the pan?
A: Use paper liners for easy removal and clean-up. Lightly spray liners if you’re worried about sticking, especially with older liners.

Conclusion

If you want a picture-perfect recipe to pin and serve, these Carrot Cake Muffins with Cheesecake Filling strike the balance between easy prep and bakery-style flavor. For the original version and inspiration, check this Carrot Cake Muffins Recipe With Cheesecake Fillings.

Carrot Cake Muffins with Cheesecake Filling

These moist Carrot Cake Muffins feature a creamy cheesecake center, making for an easy yet indulgent treat perfect for any occasion.
Prep Time 20 minutes
Cook Time 25 minutes
Total Time 45 minutes
Servings: 12 muffins
Course: Dessert, Snack
Cuisine: American
Calories: 210

Ingredients
  

For the Muffins
  • 1.5 cups all-purpose flour
  • 1 tsp baking powder
  • 0.5 tsp baking soda
  • 0.5 tsp salt
  • 1 tsp ground cinnamon
  • 0.5 tsp ground nutmeg
  • 0.5 cups granulated sugar
  • 0.5 cups brown sugar
  • 0.5 cups vegetable oil
  • 2 large eggs
  • 1 tsp vanilla extract
  • 1.5 cups grated carrots
  • 0.5 cups crushed pineapple, drained
For the Cheesecake Filling
  • 8 oz cream cheese, softened
  • 0.25 cups powdered sugar
  • 1 tsp vanilla extract

Method
 

Preparation
  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg.
  3. In another bowl, mix the granulated sugar, brown sugar, vegetable oil, eggs, and vanilla extract until well combined.
  4. Gradually add the dry ingredients to the wet ingredients, mixing until just combined.
  5. Fold in the grated carrots and crushed pineapple.
Making the Cheesecake Filling
  1. In a separate bowl, beat the cream cheese, powdered sugar, and vanilla extract until smooth.
Baking the Muffins
  1. Fill each muffin cup halfway with the carrot cake batter, add a spoonful of cheesecake filling, then top with more carrot cake batter until the cups are about 3/4 full.
  2. Bake for 20-25 minutes or until a toothpick inserted into the center comes out clean.
  3. Allow to cool in the pan for 5 minutes before transferring to a wire rack to cool completely.

Notes

Serve warm or at room temperature. For an extra touch, dust with powdered sugar or drizzle with cream cheese glaze before serving. Store cooled muffins in an airtight container in the fridge for up to 4 days.